By adding common CLEANFILES and DISTCLEANFILES variables to
common-rules.mk, we can remove these from most other Makefiles, and
also clean files more consistently.
Note that bin_PROGRAMS are already cleaned by 'make clean', so I
removed cases where these were unnecessarily added to CLEANFILES.
Instead of hardcoding the location of perl (assuming it is installed in
/usr), use /usr/bin/env to run it, and thus picking it from $PATH.
This makes it possible to run these scripts also on installations with
perl in a different prefix than /usr.
Also, given that we want enable warnings on scripts, turn the -w
previously in shebang to explicit "use warnings;" in scripts which
didn't have it before.
